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TCS
Evaluates your Alignment and outputs a Colored version indicating the local reliability.
Alignment input
Paste or upload your Multiple Sequence Alignment in CLUSTAL, FASTA, MSF, NEXUS or PHYLIP format.
MSA to evalute
Click here to use the sample file
- OR -
Click here to upload a file
[
x
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Show more options
Filter options
Use these options to control the filtering intensity of your output alignment and whether you want the filtering to remove columns (recommended) or residues
Filter
column
residue
Min
4
Max
9
Remove empty columns
yes
Output options
Use these options to control the output formats of your output alignment
Filtered
clustalw_aln
fasta_aln
phylip
Weighted
score_ascii
tcs_weighted
tcs_replicate
Graphic
score_html
score_pdf
Library Computation
Your alignment is evaluated by comparison against a collection of alignments. This collection is named a Library. This section lets you control the computation of the library. Different libraries give different score results
Pairwise Methods
Mproba_pair
Mkalign_msa
Mmafft_msa
Mmuscle_msa
Mlalign_id_pair
Mclustalw_pair
Mfast_pair
Mslow_pair
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T-Coffee Server is hosted by the Centre for Genomic Regulation (CRG) of Barcelona
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T-Coffee Server is hosted by the Centre for Genomic Regulation (CRG) of Barcelona
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