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Expresso Aligns protein sequences using structural information

Sequences inputPaste or upload your set of sequences in FASTA format

Sequences to align Click here to use the sample file

- OR - Click here to upload a file

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pcma_msa	mafft_msa	clustalw_msa	dialigntx_msa	poa_msa
muscle_msa	probcons_msa	t_coffee_msa	amap_msa	kalign_msa
fsa_msa	probconsRNA_msa	mus4_msa

best_pair4prot	fast_pair	clustalw_pair	lalign_id_pair	slow_pair
proba_pair

score_html	clustalw_aln	pir_aln	pir_seq	gcg
fasta_aln	score_ascii	msf_aln	phylip	score_pdf

T-Coffee Server

Expresso Aligns protein sequences using structural information

Sequences inputPaste or upload your set of sequences in FASTA format

Structure(s) inputUpload your PDB structure if needed (Do NOT upload Confidential Data!)

Library ComputationSelect the methods you want to use to compute the library. T-Coffee uses various sequence and structure alignment methods to compile a collection of alignments known as a Library. Use this section to select the methods.

PDB structure selectionSpecify which PDB structure (template) should be associated with which each sequence. The uploaded PDBs are automatically associated with their own sequence. Check the box to automatically fetch the templates, or fill the box and specify the sequence/template association

Output optionsUse this section to control the output format.