T-Coffee Server
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M-Coffee
Aligns DNA, RNA or Proteins by combining the output of popular aligners
Sequences input
Paste or upload your set of sequences in FASTA format
Sequences to align
Click here to use the sample file
- OR -
Click here to upload a file
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Alignment Computation
M-Coffee computes its alignments by combining a collection of Multiple Alignments named a Library. In this section you can select the methods you want to combine into the library. You can choose pairwise and multiple sequence alignment methods. The standard M-Coffee protocol only uses Multiple sequence alignment methods.
Pairwise Methods
Mlalign_id_pair
Mclustalw_pair
Mpoa_pair
Mprobcons_pair
Mfast_pair
Mproba_pair
Mmafft_pair
Mdialigntx_pair
Mslow_pair
Mpcma_pair
Mmuscle_pair
Multiple Methods
Mpcma_msa
Mmafft_msa
Mclustalw_msa
Mdialigntx_msa
Mpoa_msa
Mmuscle_msa
Mprobcons_msa
Mt_coffee_msa
Output options
Use this section to control the output format.
Alignment format
score_html
clustalw_aln
pir_aln
pir_seq
gcg
fasta_aln
score_ascii
msf_aln
phylip
score_pdf
Case
upper
lower
keep
Residue number
on
off
outorder
input
aligned
Alignment length
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T-Coffee Server is hosted by the Centre for Genomic Regulation (CRG) of Barcelona
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T-Coffee Server is hosted by the Centre for Genomic Regulation (CRG) of Barcelona
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