T-Coffee Server
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PSI-Coffee
Aligns distantly related proteins using homology extension (slow and accurate)
Sequences input
Paste or upload your set of sequences in FASTA format
Sequences to align
Click here to use the sample file
- OR -
Click here to upload a file
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Methods
T-Coffee produces an alignment by combining the output of several alignment methods. Use this section to select the individual methods.
Pairwise Structual Methods
sap_pair
TMalign_pair
mustang_pair
Multiple Methods
pcma_msa
mafft_msa
clustalw_msa
dialigntx_msa
poa_msa
muscle_msa
probcons_msa
t_coffee_msa
amap_msa
kalign_msa
fsa_msa
probconsRNA_msa
mus4_msa
Pairwise Methods
best_pair4prot
fast_pair
clustalw_pair
lalign_id_pair
slow_pair
proba_pair
Output options
Use this section to control the output format.
Alignment format
score_html
clustalw_aln
pir_aln
pir_seq
gcg
fasta_aln
score_ascii
msf_aln
phylip
score_pdf
Case
upper
lower
keep
Residue number
on
off
outorder
input
aligned
Alignment length
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T-Coffee Server is hosted by the Centre for Genomic Regulation (CRG) of Barcelona
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T-Coffee Server is hosted by the Centre for Genomic Regulation (CRG) of Barcelona
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