T-Coffee Server
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R-Coffee
Aligns RNA sequences using predicted secondary structures
Sequences input
Paste or upload your set of sequences in FASTA format
Sequences to align
Click here to use the sample file
- OR -
Click here to upload a file
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Alignment Computation
R-Coffee computes its alignments by combining a collection of Pairwise and Multiple Alignments named a Library. In this section you can select the methods you want to combine into the library. You can choose pairwise and multiple sequence alignment methods.
Multiple Methods
pcma_msa
mafft_msa
clustalw_msa
dialigntx_msa
poa_msa
muscle_msa
t_coffee_msa
amap_msa
kalign_msa
fsa_msa
probconsRNA_msa
mus4_msa
Pairwise Methods
fast_pair
clustalw_pair
lalign_id_pair
slow_pair
proba_pair
Output options
Use this section to control the output format.
Alignment format
score_html
clustalw_aln
pir_aln
pir_seq
gcg
fasta_aln
score_ascii
msf_aln
phylip
score_pdf
Case
upper
lower
keep
Residue number
on
off
outorder
input
aligned
Alignment length
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T-Coffee Server is hosted by the Centre for Genomic Regulation (CRG) of Barcelona
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T-Coffee Server is hosted by the Centre for Genomic Regulation (CRG) of Barcelona
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