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Align Protein
sequencesStructural alignments (Expresso)
Combine popular aligners (M-Coffee)
Transmembrane proteins (PSI/TM-Coffee)
Homology extension (PSI-Coffee)
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Align RNA
sequencesSecondary structure (R-Coffee)
Tertiary structure (SARA-Coffee)
Combine popular aligners (M-Coffee)
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Align DNA
sequencesCombine popular aligners (M-Coffee)
Homologous promoter regions (Pro-coffee)
Evaluation
TCS | Evaluates your Alignment and outputs a Colored version indicating the local reliability. >> Cite |
iRMSD-APDB | Evaluates Multiple Sequence Alignment using structural information with APDB and iRMSD. >> Cite |
T-RMSD | Allows fine-grained structural clustering of a given group of related protein domains >> Cite |
Strike | Evaluation of protein MSAs using a single 3D structure >> Cite |
Other
Advanced | Run your alignment using full featured T-Coffee options. >> Cite |
All | All available T-Coffee methods |
Useful links
Google Group | Support and discussion group |
tcoffee.org | Find out more about T-Coffee project and documentation |
Cedric Notredame | Home page, Courses and Blog |
Download | Sources and binaries are available for download at this link |
Check it out for latest T-Coffee developments and new tips | |
T-Coffee has a page on Facebook | |
ResearchGate | Follow the discussion on ResearchGate |
Mirror sites
Vital-IT, Swiss Institute of Bioinformatics (SIB) | |
EBI, European Bioinformatics Institute | |
IGS lab., CNRS | |
Max-Planck Institute for Developmental Biology | |
Cornell | |
EMBNet-Spain | |
Pasteur Institute |